Wednesday, September 24, 2008

Protein Synthesis

In real time, no less.

Monday, September 1, 2008

Polygenic inheritance

Polygenic inheritance is a pattern responsible for many features that seem simple on the surface. Many traits such as height, shape, weight, color, and metabolic rate are governed by the cumulative effects of many genes. Polygenic traits are not expressed as absolute or discrete characters, as was the case with Mendel's pea plant traits. Instead, polygenic traits are recognizable by their expression as a gradation of small differences (a continuous variation).



The results form a bell shaped curve, with a mean value and extremes in either direction.

Height in humans is a polygenic trait, as is color in wheat kernels.


Height in humans is NOT discontinuous. If you line up the entire class a continuum of variation is evident, with an average height and extremes in variation (very short [vertically challenged?] and very tall [vertically enhanced]).

Traits showing continuous variation are usually controlled by the additive effects of two or more separate gene pairs. This is an example of polygenic inheritance. The inheritance of EACH gene follows Mendelian rules.

Usually polygenic traits are distinguished by:
  1. Traits are usually quantified by measurement rather than counting.

  2. Two or more gene pairs contribute to the phenotype.
  3. Phenotypic expression of polygenic traits varies over a wide range.

Human polygenic traits include:

  • Height
  • SLE (Lupus) an autoimmune disease

  • Weight
  • Eye Color
  • Intelligence

  • Skin Color

  • Many forms of behaviour

The following diagrams illustrate the process of polygenic inheritance of skin colour in humans.

In this example, the trait (skin colour) is controlled by 3 genes.

The first cross is between an homozygous recessive indivivdual and an homzygous dominant indivivdual.



































Click here to view graphics about human polygenic inheritance from McGill University's Genetics pages.

Images from Purves et al., Life: The Science of Biology, 4th Edition, by Sinauer Associates (http://www.sinauer.com/) and WH Freeman (http://www.whfreeman.com/), used with permission.

Mendelian genetics

Here is a thorough look at Mendelian genetics

For level 3 Biology students, the links to chi-squared test, modifier genes and penetrance and expressivity on the left hand side are beyond the scope of the course, but everything else is recommended.

Study questions 1 - 9 are worthwhile in assessing understanding.

The role of DNA in gene expression



Every new cell that appears after cell division must have access to instructions, so that it can function as a living entity. The existence of cell lines through time is a consequence of the ability of DNA to replicate. Copies of this informative molecule are made and placed into new cellular structures. The genes can be expressed and the cell will carry out functions commensurate with the machinery produced by that gene expression.

Saturday, August 23, 2008

Guess the Poo






The following quiz comes from "Adventures in Ethics and Science", of all places.

For each of the following dung samples,

(1) what is the animal that produced it,

and

(2) what facts about the animal (in terms of its diet, digestive system, etc.) helped you identify it as the source of the pictured scat



Let's try an easy one first.
























What is it about those scats that makes you think they come from an elephant?



Now use that same logic to identify the culprits of these beauties:





































Thursday, August 21, 2008

The 375 Million Year Old Rose of Tiktaalik

In 2006 an incredible fossil discovery was made of a very important "missing link" - one of those transitional fossils that help scientists piece together major developments in the evolutionary history of life on Earth.

In this case, the fossil was Tiktaalik roseae, an extinct species of sarcopterygian fish. The Sarcopterygii are the lobed-finned fish, an ancient group of fish that are survived today by the lungfish and the "living fossil", the coelacanth, as well as you and me and all other tetrapods. Note the family resemblance...

The University of Chicago has an amazing site that explores the fossil and the science of palaeontology.

Here is an interview with one of the scientists who hunted, located and extracted this muscular fishapod. I recommend this for insights into exactly how one goes about finding fossils.





Saturday, August 16, 2008

What might and probably will happen when you die...

Thump the sky and celebrate life. Yes! I'm an organism on this planet. Fleeting as it may be, I will play my part in the forward tumble of generations. We are stepping stones for the leapfrogging double helix. But not all falls to ashes and dust.
Some things do not rot!

History must record our passing, since we will not end up in bogs, and our families or the police or the doctors will sign our last certificate.

Thursday, July 10, 2008

Further to the flatfish...



The very first image on this blog was a random choice that has now lead me to discover some fascinating information about this enigmatic fish.

Some background:

The flatfish are an order of bony fish called the Pleuronectiformes (meaning "side-swimmers" in Greek: pleuro = side + nektos = to swim). This order includes some important food fish, including the plaice, sole, halibut and flounder.
The young larval fish hatch out form the bouyant eggs and swim like normal fish. But then the amazing! The young fish settle to the bottom, on their sides, and their heads begin to twist around. The orbit (that's techno bone-speak for eye socket), with the eye in it, moves across the skull. The end result of this anatomical change is a rather laid-back fish, lying on the bottom, with two eyes on one side (the top side) of its face. It is easy to imagine the relief sighed at this evolutionary development as the grit no longer accumulated in the corner of the downward facing orb. Wink wink. In fact this is a spectacular adaptation to bottom-feeding, as the fish flounders along, chewing on brittle-stars, tube-worms and other benthic delicacies.

An American researcher (Matt Friedman) has analysed some fossil flatfish and found them to be intermediate in their degree of "eye migration" between upright fish and the modern flatfish, as shown by the diagram below:


(courtesy of the NY Times)

This clearly shows the gradual nature of the evolution of the modern flatfish form. But why? Lying on the side would precede and thus stimulate such an eye migration What pressures could result in early forms taking to the bottom in such an unfishlike way? Was this hoist upon them by an inability to swim? A deflated gas bladder (internal fish-floatie)?

One possible reason is constipation. The clogged intestinal tract of goldfish can press against their gas bladders and interfere with the inflation and deflation of the organ. This can be remedied with a pea and Daphnia puree, apparently. Sounds like a nice side-dish for whole deep-fried flounder to me.

Thursday, June 26, 2008

It's like I've got an extra memory...

because everything I want to remember about the web is right here, right now...


Tuesday, June 17, 2008

My next theme party

Even chemistry is more fun in Europe...

Monday, June 16, 2008

Elements

Found this classic song on a search of some science blogs. This one is for you, Justin!

Sunday, June 15, 2008

tommies

wow, check this out

NPBHS ICTPD


So, here Iamsittingin theNew PlymouthBoys HIgh Schholcomputersuite and I found that the space bar on thekeyboard doesn't work very well